MelampsoraV2, Main, Exploration, bibRecord, 000F36

Genetic structure of the poplar rust fungus Melampsora larici-populina: evidence for isolation by distance in Europe and recent founder effects overseas.

Identifieur interne : 000F36 ( Main/Exploration ); précédent : 000F35; suivant : 000F37

Genetic structure of the poplar rust fungus Melampsora larici-populina: evidence for isolation by distance in Europe and recent founder effects overseas.

Auteurs : Benoît Barrès [France] ; Fabien Halkett ; Cyril Dutech ; Axelle Andrieux ; Jean Pinon ; Pascal Frey

Source :

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [ 1567-1348 ] ; 2008.

RBID : pubmed:18499532

Descripteurs français

KwdFr :
- Analyse de régression (MeSH), Basidiomycota (génétique), Basidiomycota (pathogénicité), Effet fondateur (MeSH), Europe (MeSH), Géographie (MeSH), Maladies des plantes (microbiologie), Populus (microbiologie), Variation génétique (MeSH), Virulence (génétique).
MESH :
- génétique : Basidiomycota, Virulence.
- microbiologie : Maladies des plantes, Populus.
- pathogénicité : Basidiomycota.
- Analyse de régression, Effet fondateur, Europe, Géographie, Variation génétique.
mix :
- génétique des populations, melampsora larici-populina, microsatellites, peuplier noir, populus nigra.

English descriptors

KwdEn :
- Basidiomycota (genetics), Basidiomycota (pathogenicity), Europe (MeSH), Founder Effect (MeSH), Genetic Variation (MeSH), Geography (MeSH), Plant Diseases (microbiology), Populus (microbiology), Regression Analysis (MeSH), Virulence (genetics).
MESH :
- geographic : Europe.
- genetics : Basidiomycota, Virulence.
- microbiology : Plant Diseases, Populus.
- pathogenicity : Basidiomycota.
- Founder Effect, Genetic Variation, Geography, Regression Analysis.
mix :
- gradual dispersal, isolation by distance, long distance dispersal, plant pathogen, rust fungus, stochastic dispersal, virulence.

Abstract

Dispersal has a great impact on the genetic structure of populations, but remains difficult to estimate by direct measures. In particular, gradual and stochastic dispersal are often difficult to assess and to distinguish, although they have different evolutionary consequences. Plant pathogens, especially rust fungi, are suspected to display both dispersal modes, though on different spatial scales. In this study, we inferred dispersal capacities of the poplar rust fungus Melampsora larici-populina by examining the genetic diversity and structure of 13 populations from eight European and two overseas countries in the Northern hemisphere. M. larici-populina was sampled from both cultivated hybrid poplars and on the wild host, Populus nigra. The populations were analyzed with 11 microsatellite and 8 virulence markers. Although isolates displayed different virulence profiles according to the host plant, neutral markers revealed little population differentiation with respect to the type of host. This suggests an absence of reproductive isolation between populations sampled from cultivated and wild poplars. Conversely, studying the relationship between geographic and genetic structure allowed us to distinguish between isolation by distance (IBD) patterns and long distance dispersal (LDD) events. The European populations exhibited a significant IBD pattern, suggesting a regular and gradual dispersal of the pathogen over this spatial scale. Nonetheless, the genetic differentiation between these populations was low, suggesting an important gene flow on a continental scale. The two overseas populations from Iceland and Canada were shown to result from rare LDD events, and exhibited signatures of strong founder effects. Furthermore, the high genetic differentiation between both populations suggested that these two recent introductions were independent. This study illustrated how the proper use of population genetics methods can enable contrasted dispersal modes to be revealed.

Url:

https://hal.inrae.fr/hal-02669196

DOI: 10.1016/j.meegid.2008.04.005
PubMed: 18499532

Affiliations:

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic structure of the poplar rust fungus Melampsora larici-populina: evidence for isolation by distance in Europe and recent founder effects overseas.</title>
<author><name sortKey="Barres, Benoit" sort="Barres, Benoit" uniqKey="Barres B" first="Benoît" last="Barrès">Benoît Barrès</name>
<affiliation wicri:level="4"><nlm:affiliation>INRA, Nancy-Université, UMR1136, Interactions Arbres-Microorganismes, IFR 110, F-54280 Champenoux, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, Nancy-Université, UMR1136, Interactions Arbres-Microorganismes, IFR 110, F-54280 Champenoux</wicri:regionArea>
<placeName><region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
<settlement type="city">Champenoux</settlement>
</placeName>
<orgName type="university">Nancy-Université</orgName>
</affiliation>
</author>
<author><name sortKey="Halkett, Fabien" sort="Halkett, Fabien" uniqKey="Halkett F" first="Fabien" last="Halkett">Fabien Halkett</name>
</author>
<author><name sortKey="Dutech, Cyril" sort="Dutech, Cyril" uniqKey="Dutech C" first="Cyril" last="Dutech">Cyril Dutech</name>
</author>
<author><name sortKey="Andrieux, Axelle" sort="Andrieux, Axelle" uniqKey="Andrieux A" first="Axelle" last="Andrieux">Axelle Andrieux</name>
</author>
<author><name sortKey="Pinon, Jean" sort="Pinon, Jean" uniqKey="Pinon J" first="Jean" last="Pinon">Jean Pinon</name>
</author>
<author><name sortKey="Frey, Pascal" sort="Frey, Pascal" uniqKey="Frey P" first="Pascal" last="Frey">Pascal Frey</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2008">2008</date>
<idno type="RBID">pubmed:18499532</idno>
<idno type="pmid">18499532</idno>
<idno type="doi">10.1016/j.meegid.2008.04.005</idno>
<idno type="wicri:Area/PubMed/Corpus">000143</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000143</idno>
<idno type="wicri:Area/PubMed/Curation">000143</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000143</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000133</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000133</idno>
<idno type="wicri:Area/Ncbi/Merge">000127</idno>
<idno type="wicri:Area/Ncbi/Curation">000127</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000127</idno>
<idno type="wicri:doubleKey">1567-1348:2008:Barres B:genetic:structure:of</idno>
<idno type="wicri:source">HAL</idno>
<idno type="RBID">Hal:hal-02669196</idno>
<idno type="url">https://hal.inrae.fr/hal-02669196</idno>
<idno type="wicri:Area/Hal/Corpus">000063</idno>
<idno type="wicri:Area/Hal/Curation">000063</idno>
<idno type="wicri:Area/Hal/Checkpoint">000094</idno>
<idno type="wicri:explorRef" wicri:stream="Hal" wicri:step="Checkpoint">000094</idno>
<idno type="wicri:doubleKey">1567-1348:2008:Barres B:genetic:structure:of</idno>
<idno type="wicri:Area/Main/Merge">000F55</idno>
<idno type="wicri:Area/Main/Curation">000F36</idno>
<idno type="wicri:Area/Main/Exploration">000F36</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic structure of the poplar rust fungus Melampsora larici-populina: evidence for isolation by distance in Europe and recent founder effects overseas.</title>
<author><name sortKey="Barres, Benoit" sort="Barres, Benoit" uniqKey="Barres B" first="Benoît" last="Barrès">Benoît Barrès</name>
<affiliation wicri:level="4"><nlm:affiliation>INRA, Nancy-Université, UMR1136, Interactions Arbres-Microorganismes, IFR 110, F-54280 Champenoux, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, Nancy-Université, UMR1136, Interactions Arbres-Microorganismes, IFR 110, F-54280 Champenoux</wicri:regionArea>
<placeName><region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Lorraine (région)</region>
<settlement type="city">Champenoux</settlement>
</placeName>
<orgName type="university">Nancy-Université</orgName>
</affiliation>
</author>
<author><name sortKey="Halkett, Fabien" sort="Halkett, Fabien" uniqKey="Halkett F" first="Fabien" last="Halkett">Fabien Halkett</name>
</author>
<author><name sortKey="Dutech, Cyril" sort="Dutech, Cyril" uniqKey="Dutech C" first="Cyril" last="Dutech">Cyril Dutech</name>
</author>
<author><name sortKey="Andrieux, Axelle" sort="Andrieux, Axelle" uniqKey="Andrieux A" first="Axelle" last="Andrieux">Axelle Andrieux</name>
</author>
<author><name sortKey="Pinon, Jean" sort="Pinon, Jean" uniqKey="Pinon J" first="Jean" last="Pinon">Jean Pinon</name>
</author>
<author><name sortKey="Frey, Pascal" sort="Frey, Pascal" uniqKey="Frey P" first="Pascal" last="Frey">Pascal Frey</name>
</author>
</analytic>
<series><title level="j">Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases</title>
<idno type="ISSN">1567-1348</idno>
<imprint><date when="2008" type="published">2008</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (genetics)</term>
<term>Basidiomycota (pathogenicity)</term>
<term>Europe (MeSH)</term>
<term>Founder Effect (MeSH)</term>
<term>Genetic Variation (MeSH)</term>
<term>Geography (MeSH)</term>
<term>Plant Diseases (microbiology)</term>
<term>Populus (microbiology)</term>
<term>Regression Analysis (MeSH)</term>
<term>Virulence (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de régression (MeSH)</term>
<term>Basidiomycota (génétique)</term>
<term>Basidiomycota (pathogénicité)</term>
<term>Effet fondateur (MeSH)</term>
<term>Europe (MeSH)</term>
<term>Géographie (MeSH)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Populus (microbiologie)</term>
<term>Variation génétique (MeSH)</term>
<term>Virulence (génétique)</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>Europe</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term>
<term>Virulence</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Basidiomycota</term>
<term>Virulence</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Basidiomycota</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Basidiomycota</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Founder Effect</term>
<term>Genetic Variation</term>
<term>Geography</term>
<term>Regression Analysis</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de régression</term>
<term>Effet fondateur</term>
<term>Europe</term>
<term>Géographie</term>
<term>Variation génétique</term>
</keywords>
<keywords scheme="mix" xml:lang="en"><term>gradual dispersal</term>
<term>isolation by distance</term>
<term>long distance dispersal</term>
<term>plant pathogen</term>
<term>rust fungus</term>
<term>stochastic dispersal</term>
<term>virulence</term>
</keywords>
<keywords scheme="mix" xml:lang="fr"><term>génétique des populations</term>
<term>melampsora larici-populina</term>
<term>microsatellites</term>
<term>peuplier noir</term>
<term>populus nigra</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Dispersal has a great impact on the genetic structure of populations, but remains difficult to estimate by direct measures. In particular, gradual and stochastic dispersal are often difficult to assess and to distinguish, although they have different evolutionary consequences. Plant pathogens, especially rust fungi, are suspected to display both dispersal modes, though on different spatial scales. In this study, we inferred dispersal capacities of the poplar rust fungus Melampsora larici-populina by examining the genetic diversity and structure of 13 populations from eight European and two overseas countries in the Northern hemisphere. M. larici-populina was sampled from both cultivated hybrid poplars and on the wild host, Populus nigra. The populations were analyzed with 11 microsatellite and 8 virulence markers. Although isolates displayed different virulence profiles according to the host plant, neutral markers revealed little population differentiation with respect to the type of host. This suggests an absence of reproductive isolation between populations sampled from cultivated and wild poplars. Conversely, studying the relationship between geographic and genetic structure allowed us to distinguish between isolation by distance (IBD) patterns and long distance dispersal (LDD) events. The European populations exhibited a significant IBD pattern, suggesting a regular and gradual dispersal of the pathogen over this spatial scale. Nonetheless, the genetic differentiation between these populations was low, suggesting an important gene flow on a continental scale. The two overseas populations from Iceland and Canada were shown to result from rare LDD events, and exhibited signatures of strong founder effects. Furthermore, the high genetic differentiation between both populations suggested that these two recent introductions were independent. This study illustrated how the proper use of population genetics methods can enable contrasted dispersal modes to be revealed.</div>
</front>
</TEI>
<affiliations><list><country><li>France</li>
</country>
<region><li>Grand Est</li>
<li>Lorraine (région)</li>
</region>
<settlement><li>Champenoux</li>
</settlement>
<orgName><li>Nancy-Université</li>
</orgName>
</list>
<tree><noCountry><name sortKey="Andrieux, Axelle" sort="Andrieux, Axelle" uniqKey="Andrieux A" first="Axelle" last="Andrieux">Axelle Andrieux</name>
<name sortKey="Dutech, Cyril" sort="Dutech, Cyril" uniqKey="Dutech C" first="Cyril" last="Dutech">Cyril Dutech</name>
<name sortKey="Frey, Pascal" sort="Frey, Pascal" uniqKey="Frey P" first="Pascal" last="Frey">Pascal Frey</name>
<name sortKey="Halkett, Fabien" sort="Halkett, Fabien" uniqKey="Halkett F" first="Fabien" last="Halkett">Fabien Halkett</name>
<name sortKey="Pinon, Jean" sort="Pinon, Jean" uniqKey="Pinon J" first="Jean" last="Pinon">Jean Pinon</name>
</noCountry>
<country name="France"><region name="Grand Est"><name sortKey="Barres, Benoit" sort="Barres, Benoit" uniqKey="Barres B" first="Benoît" last="Barrès">Benoît Barrès</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/MelampsoraV2/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000F36 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000F36 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    MelampsoraV2
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:18499532
   |texte=   Genetic structure of the poplar rust fungus Melampsora larici-populina: evidence for isolation by distance in Europe and recent founder effects overseas.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:18499532" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a MelampsoraV2

This area was generated with Dilib version V0.6.38.
Data generation: Tue Nov 24 19:18:52 2020. Site generation: Tue Nov 24 19:22:33 2020

Serveur d'exploration Melampsora (ISTEX)

Genetic structure of the poplar rust fungus Melampsora larici-populina: evidence for isolation by distance in Europe and recent founder effects overseas.

Genetic structure of the poplar rust fungus Melampsora larici-populina: evidence for isolation by distance in Europe and recent founder effects overseas.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki

	Serveur d'exploration Melampsora (ISTEX)
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.